※ 種 (tane) is a general term used for seed of any kind, including the stones/pits in the fruit of fruit trees. When written as 実蓏 (tane) however, it clearly refers only to seeds of herbaceousplants.
Kami ii tamaikeru wa Chi wa aokusa to tane wo shōzuru kusa to sono rui ni shitagai mi wo musubi mizukara tane wo motsu tokoro no mi wo musubu ki wo chi ni idasubeshi to sunawachi kaku narinu
And God said, Let the earth bring forth grass, the herb yielding seed, and the fruit tree yielding fruit after his kind, whose seed is in itself, upon the earth: and it was so
Kami ii tamaikeru wa Miyo ware zenchi no omote ni aru tane no naru subete no kusa to tane aru konomi no naru subete no ki to wo nanjira ni atau kore wa nanjira no kate to narubeshi
And God said, Behold, I have given you every herb bearing seed, which is upon the face of all the earth, and every tree, in the which is the fruit of a tree yielding seed; to you it shall be for meat.